SPOT-RNA2: Improved RNA Secondary Structure and Tertiary Base-pairing Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning.

Our resources are limited. If you wish to run several batches per day please make use of the downloadable package or contact the administrator directly.

Submit

E-mail address (required):
Target (optional):
Input your RNA Sequences: Maximum: 500 nts, Only one RNA sequence at a time

Note:

To run SPOT-RNA2 for long sequences, please use standalone version of SPOT-RNA2 mentioned below.

Standalone Program to Run Locally:

SPOT-RNA2-local

Datasets:

bpRNA: Initial Learning (Training TR0, validation VL0, and test TS0) Dropbox or Nihao Cloud

PDB: Transfer Learning (Training TR1, validation VL1, and test TS1) Dropbox or Nihao Cloud

Reference:

Singh, J., Paliwal, K., Zhang, T., Singh, J., Litfin, T., Zhou, Y., 2020. Improved RNA Secondary Structure and Tertiary Base-pairing Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning.