Downloads

RNA

RNA Temperature adaptation dataset

• RNA Temperature adaptation

RNA structure prediction

• RNAsnap: RNA solvent accessibility prediction from sequence

Protein

Protein 3D Structure Prediction

• SPARKS-x: Fold Recognition

Protein Local Structural Prediction

• SPOT-Contact: Sequence-based contact map prediction
• SPOT-1D: Latest method On sequence-based prediction of structural features for proteins
• SPIDER3-Single (Numpy): Single-sequence-based prediction of structural features for proteins
• SPOT-Disorder2: Sequence-based prediction of intrinsically disordered proteins: V2.0
• SPOT-Disorder-Single: Single sequence-based prediction of intrinsically disordered proteins

Older versions, please use SPOT-1D instead. Links are provided for reference:

• SPIDER3: Sequence-based prediction of structural features for proteins
• SPOT-Disorder: Sequence-based prediction of intrinsically disordered proteins
• SPIDER2: Predicting secondary structure, local backbone angles, and ASA of proteins
• SPINE-D: Protein disorder prediction
• SPIDER-HSE: HSE (alpha/beta) prediction from protein sequence
• SPIDER2 (including HSE): Predicting secondary structure, local backbone angles, ASA, and [HSE] of proteins
• SPINE-X: Protein secondary Structure Prediction

DFIRE, Knowledge-based potential function

• dDFIRE: Calculating Conformational Free Energy
• DFIRE2 source code
• DFIRE2 executable
• DFIRE-RNA source code (Github)

Protein Structure Alignment

• SPalign: Structure Alignment Program (source code)
• SPalignNS: Non-sequential Structure Alignment Program (source code)

Protein Function Prediction

• DDNA3: Protein-DNA interaction energy
• SPOT-Struct-RNA: RNA protein prediction from Structure
• SPOT-Seq-RNA: RNA protein prediction from Sequence
• SPOT-MoRF: MoRF prediction by transfer learning