SPOT-RNA-2D: Predicting RNA distance-based contact maps by integrated deep learning on physics-inferred base-pairing and evolutionary-derived coupling.
Our resources are limited. If you wish to run several batches per day please make use of the downloadable package or contact the administrator directly.
Example-1: 3NPN (Chain-A) Example-2: 6P2H (Chain-A)
Standalone Program to Run Locally:
Sequences Secondary structure labels Distance-based contact-labels Predictions
Jaswinder Singh, Kuldip Paliwal, Thomas Litfin, Jaspreet Singh, and Yaoqi Zhou. “Predicting RNA distance-based contact maps by integrated deep learning on physics-inferred secondary structure and evolutionary-derived mutational coupling.” under-review (2022).